SASSIE INSTALLER: version 0.99 beta : 09/05/2011 executed by user : root on Mon Jan 2 13:32:23 2012 current directory : /Users/dmroge/VirFusion/src/sassie_1.0_rev_441 hostname : bob.sandia.gov >> NOTE: This script may compile and install software >> including Python > 2.6.X, NumPy 1.6.1, SciPy 0.9.0 >> Swig 2.0.4, gfortan 4.6.1, Gnuplot 4.4.3 >> Installation on Linux machines may require an internet connection to download dependencies >> Apple installations will include Xcode 3.X, EPD-free-7.X, & AguaTerm 1.1.0 >> The re-distributed software is open-source and existing license terms remain in effect >> The software will be installed in /usr/local/bin >> If you wish to install this software in your own Python distribution >> you probably can construct a method of your own from reading this installation script. >> alternate installation path chosen : /sw/local/bin platform.system() = Darwin platform.platform() = Darwin-10.8.0-i386-64bit platform.processor() = i386 platform.architecture()[0] = 64bit platform.architecture()[1] = Apple OS Detected release = 10.6.8 machine = i386 >OS_TYPE = Darwin >IS OS SUPPORTED? = YES >> There are two installation types available: (1) Basic SASSIE installation (2) Basic SASSIE installation PLUS "courtesy modules" >> NOTE that for option (2) you must download and possibly >> extract binary executable files from external sources >> see: www.smallangles.net for complete instructions >> you entered 1 : basic CHECKING AND INSTALLING DEPENDENCIES >> checking Mac OS installation >> NOTE: the installer assumes that you have installed >> the developer applications in their normal locations found /Developer/Applications/Xcode.app/Contents/MacOS/Xcode found /usr/bin/gcc found /usr/bin/g++ found /sw/bin/gfortran found /sw/bin/gnuplot found /sw/bin/swig >> dependencies summary: >> it seems that you have the programs needed to continue the installation > installing mdx mdx_pre2.0.3b/ mdx_pre2.0.3b/arch/ 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mdx_pre2.0.3b/src/rfftw/fhb_2.c mdx_pre2.0.3b/src/rfftw/fhb_3.c mdx_pre2.0.3b/src/rfftw/fhb_32.c mdx_pre2.0.3b/src/rfftw/fhb_4.c mdx_pre2.0.3b/src/rfftw/fhb_5.c mdx_pre2.0.3b/src/rfftw/fhb_6.c mdx_pre2.0.3b/src/rfftw/fhb_7.c mdx_pre2.0.3b/src/rfftw/fhb_8.c mdx_pre2.0.3b/src/rfftw/fhb_9.c mdx_pre2.0.3b/src/rfftw/fhf_10.c mdx_pre2.0.3b/src/rfftw/fhf_16.c mdx_pre2.0.3b/src/rfftw/fhf_2.c mdx_pre2.0.3b/src/rfftw/fhf_3.c mdx_pre2.0.3b/src/rfftw/fhf_32.c mdx_pre2.0.3b/src/rfftw/fhf_4.c mdx_pre2.0.3b/src/rfftw/fhf_5.c mdx_pre2.0.3b/src/rfftw/fhf_6.c mdx_pre2.0.3b/src/rfftw/fhf_7.c mdx_pre2.0.3b/src/rfftw/fhf_8.c mdx_pre2.0.3b/src/rfftw/fhf_9.c mdx_pre2.0.3b/src/rfftw/frc_1.c mdx_pre2.0.3b/src/rfftw/frc_10.c mdx_pre2.0.3b/src/rfftw/frc_11.c mdx_pre2.0.3b/src/rfftw/frc_12.c mdx_pre2.0.3b/src/rfftw/frc_128.c mdx_pre2.0.3b/src/rfftw/frc_13.c mdx_pre2.0.3b/src/rfftw/frc_14.c mdx_pre2.0.3b/src/rfftw/frc_15.c mdx_pre2.0.3b/src/rfftw/frc_16.c mdx_pre2.0.3b/src/rfftw/frc_2.c mdx_pre2.0.3b/src/rfftw/frc_3.c mdx_pre2.0.3b/src/rfftw/frc_32.c mdx_pre2.0.3b/src/rfftw/frc_4.c mdx_pre2.0.3b/src/rfftw/frc_5.c mdx_pre2.0.3b/src/rfftw/frc_6.c mdx_pre2.0.3b/src/rfftw/frc_64.c mdx_pre2.0.3b/src/rfftw/frc_7.c mdx_pre2.0.3b/src/rfftw/frc_8.c mdx_pre2.0.3b/src/rfftw/frc_9.c mdx_pre2.0.3b/src/rfftw/GNUmakefile mdx_pre2.0.3b/src/rfftw/Makefile.am mdx_pre2.0.3b/src/rfftw/Makefile.in mdx_pre2.0.3b/src/rfftw/NOTES mdx_pre2.0.3b/src/rfftw/rconfig.c mdx_pre2.0.3b/src/rfftw/rexec.c mdx_pre2.0.3b/src/rfftw/rexec2.c mdx_pre2.0.3b/src/rfftw/rfftw.h mdx_pre2.0.3b/src/rfftw/rfftwf77.c mdx_pre2.0.3b/src/rfftw/rfftwnd.c mdx_pre2.0.3b/src/rfftw/rgeneric.c mdx_pre2.0.3b/src/rfftw/rplanner.c mdx_pre2.0.3b/src/simen/ mdx_pre2.0.3b/src/simen/engine.h mdx_pre2.0.3b/src/simen/GNUmakefile mdx_pre2.0.3b/src/simen/param.h mdx_pre2.0.3b/src/simen/result.h mdx_pre2.0.3b/src/simen/run.c mdx_pre2.0.3b/src/simen/simen.c mdx_pre2.0.3b/src/simen/simen.h mdx_pre2.0.3b/src/simen/update.c mdx_pre2.0.3b/src/step/ mdx_pre2.0.3b/src/step/.cgmin.c.swp mdx_pre2.0.3b/src/step/cgmin.c mdx_pre2.0.3b/src/step/drude_chen.c mdx_pre2.0.3b/src/step/drude_roux.c mdx_pre2.0.3b/src/step/drude_thermal.c mdx_pre2.0.3b/src/step/GNUmakefile mdx_pre2.0.3b/src/step/nosehoover.c mdx_pre2.0.3b/src/step/nosehoover_explicit.c mdx_pre2.0.3b/src/step/settle.c mdx_pre2.0.3b/src/step/shadow.c mdx_pre2.0.3b/src/step/step.c mdx_pre2.0.3b/src/step/step.h mdx_pre2.0.3b/src/step/step_defn.h mdx_pre2.0.3b/src/step/step_error.c mdx_pre2.0.3b/src/step/step_force.c mdx_pre2.0.3b/src/step/step_output.c mdx_pre2.0.3b/src/step/step_results.c mdx_pre2.0.3b/src/step/step_setup.c mdx_pre2.0.3b/src/step/tempbath.c mdx_pre2.0.3b/src/step/verlet.c mdx_pre2.0.3b/src/timer/ mdx_pre2.0.3b/src/timer/GNUmakefile mdx_pre2.0.3b/src/timer/timer.c mdx_pre2.0.3b/src/timer/timer.h mdx_pre2.0.3b/src.lst mdx_pre2.0.3b/src.mk mdx_pre2.0.3b/VERSION # ./build/.config.root.bob.sandia.gov # (use "make config" to generate) OS := Darwin ARCH := generic BUILD := Darwin_generic BUILD_TYPE := dynamic plugin bin BUILD_DEMO := yes HAVE_FFTW := no SRC := debug adt mdapi mdio timer random step mgrid pmetest force deven simen mdsim dpsim DOC := mdapi INSTALL := yes INSTALL_DEMO := no INSTALL_DIR := /usr/local INSTALL_BIN := /usr/local/bin INSTALL_LIB := /usr/local/lib INSTALL_INCLUDE := /usr/local/include/mdx INSTALL_DOC := /usr/local/doc FFTW_LIBS := mkdir -p /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic mkdir -p /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/bin mkdir -p /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib mkdir -p /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/demo mkdir -p /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_dynamic mkdir -p /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_plugin mkdir -p /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_bin mkdir -p /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_demo mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_demo/debug cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -c -o demo_debug.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/debug/demo_debug.c cc -O -std=c99 -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib demo_debug.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/demo/demo_debug mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_dynamic/adt mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_demo/adt cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o array.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/adt/array.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o list.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/adt/list.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o table.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/adt/table.c libtool -dynamic -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib -install_name /usr/local/lib/libadt.dylib array.o list.o table.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib/libadt.dylib -lc -lgcc_s.1 cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -c -o demo_array.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/adt/demo_array.c cc -O -std=c99 -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib demo_array.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/demo/demo_array -ladt cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -c -o demo_list.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/adt/demo_list.c cc -O -std=c99 -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib demo_list.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/demo/demo_list -ladt cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -c -o demo_table.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/adt/demo_table.c cc -O -std=c99 -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib demo_table.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/demo/demo_table -ladt mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_dynamic/mdapi mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_demo/mdapi cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o mdsetup.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdapi/mdsetup.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o mderror.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdapi/mderror.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o mdtypes.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdapi/mdtypes.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o mddata.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdapi/mddata.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o mdsync.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdapi/mdsync.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o mdrun.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdapi/mdrun.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o mdcback.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdapi/mdcback.c libtool -dynamic -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib -install_name /usr/local/lib/libmdapi.dylib mdsetup.o mderror.o mdtypes.o mddata.o mdsync.o mdrun.o mdcback.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib/libmdapi.dylib -ladt -lc -lgcc_s.1 cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -c -o demo_mdapi.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdapi/demo_mdapi.c cc -O -std=c99 -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib demo_mdapi.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/demo/demo_mdapi -lmdapi -ladt mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_dynamic/mdio mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_demo/mdio cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o file.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdio/file.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o config.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdio/config.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o param.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdio/param.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o topo.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdio/topo.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o bincoord.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdio/bincoord.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o pdbcoord.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdio/pdbcoord.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o dcd.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdio/dcd.c libtool -dynamic -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib -install_name /usr/local/lib/libmdio.dylib file.o config.o param.o topo.o bincoord.o pdbcoord.o dcd.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib/libmdio.dylib -ladt -lm -lc -lgcc_s.1 cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -c -o demo_config.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdio/demo_config.c cc -O -std=c99 -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib demo_config.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/demo/demo_config -lmdio -ladt -lm cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -c -o demo_param.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdio/demo_param.c cc -O -std=c99 -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib demo_param.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/demo/demo_param -lmdio -ladt -lm cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -c -o demo_topo.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdio/demo_topo.c cc -O -std=c99 -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib demo_topo.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/demo/demo_topo -lmdio -ladt -lm cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -c -o demo_bincoord.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdio/demo_bincoord.c cc -O -std=c99 -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib demo_bincoord.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/demo/demo_bincoord -lmdio -ladt -lm cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -c -o demo_pdbcoord.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdio/demo_pdbcoord.c cc -O -std=c99 -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib demo_pdbcoord.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/demo/demo_pdbcoord -lmdio -ladt -lm mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_dynamic/timer mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_demo/timer cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o timer.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/timer/timer.c libtool -dynamic -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib -install_name /usr/local/lib/libtimer.dylib timer.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib/libtimer.dylib -lc -lgcc_s.1 mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_dynamic/random mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_demo/random cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o random.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/random/random.c libtool -dynamic -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib -install_name /usr/local/lib/librandom.dylib random.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib/librandom.dylib -lm -lc -lgcc_s.1 mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_dynamic/step mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_demo/step cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o step_setup.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/step/step_setup.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o step_force.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/step/step_force.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o step_results.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/step/step_results.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o step_output.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/step/step_output.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o step_error.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/step/step_error.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o verlet.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/step/verlet.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o settle.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/step/settle.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o shadow.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/step/shadow.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o tempbath.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/step/tempbath.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o nosehoover_explicit.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/step/nosehoover_explicit.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o cgmin.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/step/cgmin.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o drude_thermal.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/step/drude_thermal.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o drude_roux.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/step/drude_roux.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o drude_chen.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/step/drude_chen.c libtool -dynamic -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib -install_name /usr/local/lib/libstep.dylib step_setup.o step_force.o step_results.o step_output.o step_error.o verlet.o settle.o shadow.o tempbath.o nosehoover_explicit.o cgmin.o drude_thermal.o drude_roux.o drude_chen.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib/libstep.dylib -lrandom -lm -lc -lgcc_s.1 mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_dynamic/mgrid mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_demo/mgrid cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o mgrid.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/mgrid.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o lattice.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/lattice.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o split.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/split.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o short.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/short.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o exact.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/exact.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o setup.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/setup.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o ncubic.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/ncubic.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o nbspline.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/nbspline.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o nquint1.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/nquint1.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o nquint2.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/nquint2.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o nheptic1.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/nheptic1.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o nheptic3.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/nheptic3.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o nnonic1.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/nnonic1.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o nnonic4.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/nnonic4.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o nhermite.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/nhermite.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o pcubic.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/pcubic.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o pbspline.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/pbspline.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o pquint1.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/pquint1.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o pquint2.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/pquint2.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o pheptic1.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/pheptic1.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o pheptic3.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/pheptic3.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o pnonic1.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/pnonic1.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o pnonic4.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/pnonic4.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -DMDX_DYNAMIC -c -o phermite.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/phermite.c libtool -dynamic -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib -install_name /usr/local/lib/libmgrid.dylib mgrid.o lattice.o split.o short.o exact.o setup.o ncubic.o nbspline.o nquint1.o nquint2.o nheptic1.o nheptic3.o nnonic1.o nnonic4.o nhermite.o pcubic.o pbspline.o pquint1.o pquint2.o pheptic1.o pheptic3.o pnonic1.o pnonic4.o phermite.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib/libmgrid.dylib -lm -lc -lgcc_s.1 cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMGRID_FAST_SPLIT -c -o demo_mgrid.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mgrid/demo_mgrid.c cc -O -std=c99 -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib demo_mgrid.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/demo/demo_mgrid -lmgrid -lm mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_dynamic/pmetest mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_demo/pmetest c++ -O -std=c++98 -fPIC -dynamic -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o pmetest.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/pmetest/pmetest.C c++ -O -std=c++98 -fPIC -dynamic -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o ComputePme.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/pmetest/ComputePme.C cc -O -std=c99 -fPIC -dynamic -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o error.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/pmetest/error.c c++ -O -std=c++98 -fPIC -dynamic -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o lattice.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/pmetest/lattice.C c++ -O -std=c++98 -fPIC -dynamic -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o PmeBase.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/pmetest/PmeBase.C c++ -O -std=c++98 -fPIC -dynamic -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o PmeDirect.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/pmetest/PmeDirect.C c++ -O -std=c++98 -fPIC -dynamic -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o PmeKSpace.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/pmetest/PmeKSpace.C c++ -O -std=c++98 -fPIC -dynamic -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o PmeRealSpace.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/pmetest/PmeRealSpace.C libtool -dynamic -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib -install_name /usr/local/lib/libpmetest.dylib pmetest.o ComputePme.o error.o lattice.o PmeBase.o PmeDirect.o PmeKSpace.o PmeRealSpace.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib/libpmetest.dylib -lm -lstdc++.6 -lc -lgcc_s.1 cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -c -o demo_pme.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/pmetest/demo_pme.c c++ -O -std=c++98 -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib demo_pme.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/demo/demo_pme -lpmetest -lm mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_dynamic/force mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_demo/force cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o fparam.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/force/fparam.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o fdomain.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/force/fdomain.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o fresult.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/force/fresult.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o fselect.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/force/fselect.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o force.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/force/force.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o bonded.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/force/bonded.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o bres.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/force/bres.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o compute.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/force/compute.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o nbpairs.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/force/nbpairs.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o nbsetup.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/force/nbsetup.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o setup.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/force/setup.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o bucksafe.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/force/bucksafe.c libtool -dynamic -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib -install_name /usr/local/lib/libforce.dylib fparam.o fdomain.o fresult.o fselect.o force.o bonded.o bres.o compute.o nbpairs.o nbsetup.o setup.o bucksafe.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib/libforce.dylib -lm -lc -lgcc_s.1 cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -c -o test_bucksafe.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/force/test_bucksafe.c cc -O -std=c99 -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib test_bucksafe.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/demo/test_bucksafe -lforce -lm cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -c -o plot_buck.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/force/plot_buck.c cc -O -std=c99 -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib plot_buck.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/demo/plot_buck -lforce -lm mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_dynamic/deven mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_demo/deven cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o deven.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/deven/deven.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o run.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/deven/run.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o update.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/deven/update.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o force.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/deven/force.c libtool -dynamic -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib -install_name /usr/local/lib/libdeven.dylib deven.o run.o update.o force.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib/libdeven.dylib -lmdapi -ladt -lforce -lmgrid -lpmetest -lstep -lrandom -ltimer -lm -lstdc++.6 -lc -lgcc_s.1 mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_dynamic/simen mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_demo/simen cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o simen.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/simen/simen.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o run.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/simen/run.c cc -O -std=c99 -fPIC -dynamic -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_DYNAMIC -c -o update.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/simen/update.c libtool -dynamic -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib -install_name /usr/local/lib/libsimen.dylib simen.o run.o update.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib/libsimen.dylib -lmdapi -ladt -lforce -lrandom -lm -lc -lgcc_s.1 mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_bin/mdsim mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_demo/mdsim cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DBUILD_INFO='"root, Mon Jan 2 13:33:20 MST 2012, Darwin 10.8.0 i386"' -DMDX_BIN -c -o mdsim.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdsim/mdsim.c cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DBUILD_INFO='"root, Mon Jan 2 13:33:20 MST 2012, Darwin 10.8.0 i386"' -DMDX_BIN -c -o sim.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdsim/sim.c cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DBUILD_INFO='"root, Mon Jan 2 13:33:20 MST 2012, Darwin 10.8.0 i386"' -DMDX_BIN -c -o simparam.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdsim/simparam.c cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DBUILD_INFO='"root, Mon Jan 2 13:33:20 MST 2012, Darwin 10.8.0 i386"' -DMDX_BIN -c -o spcheck.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdsim/spcheck.c cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DBUILD_INFO='"root, Mon Jan 2 13:33:20 MST 2012, Darwin 10.8.0 i386"' -DMDX_BIN -c -o engparam.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdsim/engparam.c cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DBUILD_INFO='"root, Mon Jan 2 13:33:20 MST 2012, Darwin 10.8.0 i386"' -DMDX_BIN -c -o system.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdsim/system.c cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DBUILD_INFO='"root, Mon Jan 2 13:33:20 MST 2012, Darwin 10.8.0 i386"' -DMDX_BIN -c -o callback.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdsim/callback.c cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DBUILD_INFO='"root, Mon Jan 2 13:33:20 MST 2012, Darwin 10.8.0 i386"' -DMDX_BIN -c -o error.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdsim/error.c cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DBUILD_INFO='"root, Mon Jan 2 13:33:20 MST 2012, Darwin 10.8.0 i386"' -DMDX_BIN -c -o defeng.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdsim/defeng.c c++ -O -std=c++98 -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib mdsim.o sim.o simparam.o spcheck.o engparam.o system.o callback.o error.o defeng.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/bin/mdsim -lmdio -lsimen -ldeven -lmgrid -lpmetest -lmdapi -ladt -lforce -lstep -lrandom -ltimer -lm cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DBUILD_INFO='"root, Mon Jan 2 13:33:21 MST 2012, Darwin 10.8.0 i386"' -c -o demo_simparam.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdsim/demo_simparam.c cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DBUILD_INFO='"root, Mon Jan 2 13:33:21 MST 2012, Darwin 10.8.0 i386"' -c -o simparam.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdsim/simparam.c cc -O -std=c99 -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DBUILD_INFO='"root, Mon Jan 2 13:33:21 MST 2012, Darwin 10.8.0 i386"' -c -o error.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/mdsim/error.c c++ -O -std=c++98 -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib demo_simparam.o simparam.o error.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/demo/demo_simparam -lmdio -lsimen -ldeven -lmgrid -lpmetest -lmdapi -ladt -lforce -lstep -lrandom -ltimer -lm mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_bin/dpsim mkdir /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/obj_demo/dpsim cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o dpsim.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/dpsim.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o output_pdb.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/output_pdb.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o output_dcd.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/output_dcd.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o data_argon.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/data_argon.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o data_spc.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/data_spc.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o data_rpol.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/data_rpol.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o data_pol3.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/data_pol3.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o data_pol1.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/data_pol1.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o data_common.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/data_common.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o force.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/force.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o fnonbond.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/fnonbond.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o vdw.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/vdw.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o electro.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/electro.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o standEwald.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/standEwald.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o standEwald_dir.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/standEwald_dir.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o standEwald_rec.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/standEwald_rec.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o explicitG.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/explicitG.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o pme.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/pme.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o pme_direct.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/pme_direct.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o pme_recip.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/pme_recip.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o PmeKSpace.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/PmeKSpace.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o PmeRealSpace.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/PmeRealSpace.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o PmeBase.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/PmeBase.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o lattice.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/lattice.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o dsolvers.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/dsolvers.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o predictor.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/predictor.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o preconditioner.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/preconditioner.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o dipole_poly.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/dipole_poly.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o dpoly.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/dpoly.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o constEnergy.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/constEnergy.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o leapfrog.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/leapfrog.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o nose_hoover_dynamics.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/nose_hoover_dynamics.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o Berendsen_wc.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/Berendsen_wc.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o linkcell.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/linkcell.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o shake.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/shake.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o rattle.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/rattle.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o settle.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/settle.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o auto_corr.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/auto_corr.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o avgvar.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/avgvar.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o linearfit.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/linearfit.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o timer.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/timer.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o helper.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/helper.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o data_collector.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/data_collector.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o random.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/random.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o myerfc.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/myerfc.c cc -O -std=c99 -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/fftw -I/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/rfftw -DMDX_DARWIN -D_GNU_SOURCE -iquote /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src -Wall -pedantic -DMDX_BIN -c -o vecbuffer.o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/src/dpsim/vecbuffer.c cc -O -std=c99 -L/Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/lib dpsim.o output_pdb.o output_dcd.o data_argon.o data_spc.o data_rpol.o data_pol3.o data_pol1.o data_common.o force.o fnonbond.o vdw.o electro.o standEwald.o standEwald_dir.o standEwald_rec.o explicitG.o pme.o pme_direct.o pme_recip.o PmeKSpace.o PmeRealSpace.o PmeBase.o lattice.o dsolvers.o predictor.o preconditioner.o dipole_poly.o dpoly.o constEnergy.o leapfrog.o nose_hoover_dynamics.o Berendsen_wc.o linkcell.o shake.o rattle.o settle.o auto_corr.o avgvar.o linearfit.o timer.o helper.o data_collector.o random.o myerfc.o vecbuffer.o -o /Users/dmroge/VirFusion/src/sassie_1.0_rev_441/sassie/distribution/general/mdx_pre2.0.3b/build/Darwin_generic/bin/dpsim -lmdio -ladt -lm running build running build_ext building '_dcdio' extension swigging dcdio.i to dcdio_wrap.c swig -python -o dcdio_wrap.c dcdio.i creating build creating build/temp.macosx-10.6-x86_64-2.6 gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/lib/python2.6/site-packages/numpy/core/include -I/sw/include/python2.6 -c dcdio_wrap.c -o build/temp.macosx-10.6-x86_64-2.6/dcdio_wrap.o gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/lib/python2.6/site-packages/numpy/core/include -I/sw/include/python2.6 -c dcdio.c -o build/temp.macosx-10.6-x86_64-2.6/dcdio.o creating build/lib.macosx-10.6-x86_64-2.6 gcc -L/sw/lib -bundle -L/sw/lib/python2.6/config -lpython2.6 build/temp.macosx-10.6-x86_64-2.6/dcdio_wrap.o build/temp.macosx-10.6-x86_64-2.6/dcdio.o -o build/lib.macosx-10.6-x86_64-2.6/_dcdio.so running build running build_ext building '_mask' extension swigging mask.i to mask_wrap.c swig -python -o mask_wrap.c mask.i creating build creating build/temp.macosx-10.6-x86_64-2.6 gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/lib/python2.6/site-packages/numpy/core/include -I/sw/include/python2.6 -c mask_wrap.c -o build/temp.macosx-10.6-x86_64-2.6/mask_wrap.o gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/lib/python2.6/site-packages/numpy/core/include -I/sw/include/python2.6 -c mask.c -o build/temp.macosx-10.6-x86_64-2.6/mask.o creating build/lib.macosx-10.6-x86_64-2.6 gcc -L/sw/lib -bundle -L/sw/lib/python2.6/config -lpython2.6 build/temp.macosx-10.6-x86_64-2.6/mask_wrap.o build/temp.macosx-10.6-x86_64-2.6/mask.o -o build/lib.macosx-10.6-x86_64-2.6/_mask.so running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "sassie.sasmol._dcdio" sources creating build creating build/src.macosx-10.6-x86_64-2.6 creating build/src.macosx-10.6-x86_64-2.6/sassie creating build/src.macosx-10.6-x86_64-2.6/sassie/sasmol creating build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions creating build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/dcdio swig: sassie/sasmol/extensions/dcdio/dcdio.i swig -python -I/sw/lib/python2.6/site-packages/numpy/core/include -o build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/dcdio/dcdio_wrap.c -outdir build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/dcdio sassie/sasmol/extensions/dcdio/dcdio.i building extension "sassie.sasmol._mask" sources creating build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/mask swig: sassie/sasmol/extensions/mask/mask.i swig -python -I/sw/lib/python2.6/site-packages/numpy/core/include -o build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/mask/mask_wrap.c -outdir build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/mask sassie/sasmol/extensions/mask/mask.i building extension "sassie.sasmol.foverlap" sources f2py options: [] f2py:> build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/foverlapmodule.c Reading fortran codes... Reading file 'sassie/sasmol/extensions/overlap/foverlap.f' (format:fix,strict) Post-processing... Block: foverlap Block: foverlap Post-processing (stage 2)... Building modules... Building module "foverlap"... Constructing wrapper function "foverlap"... check = foverlap(coor1,coor2,cut) Wrote C/API module "foverlap" to file "build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/foverlapmodule.c" adding 'build/src.macosx-10.6-x86_64-2.6/fortranobject.c' to sources. adding 'build/src.macosx-10.6-x86_64-2.6' to include_dirs. copying /sw/lib/python2.6/site-packages/numpy/f2py/src/fortranobject.c -> build/src.macosx-10.6-x86_64-2.6 copying /sw/lib/python2.6/site-packages/numpy/f2py/src/fortranobject.h -> build/src.macosx-10.6-x86_64-2.6 building extension "sassie.sasmol.matrix_math" sources f2py options: [] f2py:> build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/matrix_mathmodule.c Reading fortran codes... Reading file 'sassie/sasmol/extensions/matrix_math/matrix_math.f' (format:fix,strict) Post-processing... Block: matrix_math Block: matrix_multiply Post-processing (stage 2)... Building modules... Building module "matrix_math"... Constructing wrapper function "matrix_multiply"... c = matrix_multiply(a,b,[dim_a1,dim_a2,dim_b2]) Wrote C/API module "matrix_math" to file "build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/matrix_mathmodule.c" adding 'build/src.macosx-10.6-x86_64-2.6/fortranobject.c' to sources. adding 'build/src.macosx-10.6-x86_64-2.6' to include_dirs. building extension "sassie.analyze.cube" sources building extension "sassie.analyze.renorm" sources building extension "sassie.simulate.rigid_body.two_body_grid.foverlap" sources f2py options: [] f2py:> build/src.macosx-10.6-x86_64-2.6/sassie/simulate/rigid_body/two_body_grid/foverlapmodule.c creating build/src.macosx-10.6-x86_64-2.6/sassie/simulate creating build/src.macosx-10.6-x86_64-2.6/sassie/simulate/rigid_body creating build/src.macosx-10.6-x86_64-2.6/sassie/simulate/rigid_body/two_body_grid Reading fortran codes... Reading file 'sassie/simulate/rigid_body/two_body_grid/extensions/overlap/foverlap.f' (format:fix,strict) Post-processing... Block: foverlap Block: foverlap Post-processing (stage 2)... Building modules... Building module "foverlap"... Constructing wrapper function "foverlap"... check = foverlap(coor1,coor2,cut) Wrote C/API module "foverlap" to file "build/src.macosx-10.6-x86_64-2.6/sassie/simulate/rigid_body/two_body_grid/foverlapmodule.c" adding 'build/src.macosx-10.6-x86_64-2.6/fortranobject.c' to sources. adding 'build/src.macosx-10.6-x86_64-2.6' to include_dirs. building extension "sassie.simulate.monte_carlo.monomer.overlap" sources building data_files sources build_src: building npy-pkg config files running build_py creating build/lib.macosx-10.6-x86_64-2.6 creating build/lib.macosx-10.6-x86_64-2.6/sassie copying __init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie copying installer.py -> build/lib.macosx-10.6-x86_64-2.6/sassie creating build/lib.macosx-10.6-x86_64-2.6/sassie/analyze copying sassie/analyze/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/analyze copying sassie/analyze/best.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/analyze copying sassie/analyze/density.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/analyze creating build/lib.macosx-10.6-x86_64-2.6/sassie/calculate copying sassie/calculate/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/calculate copying sassie/calculate/gcrysol.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/calculate copying sassie/calculate/gcryson.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/calculate copying sassie/calculate/ghydropro.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/calculate copying sassie/calculate/gxtal2sas.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/calculate copying sassie/calculate/sld.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/calculate copying sassie/calculate/volumetobeads.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/calculate creating build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/aprogTable.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/graphical_align.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/graphical_best.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/graphical_center.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/graphical_complex_generate.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/graphical_crysol.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/graphical_cryson.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/graphical_density.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/graphical_em.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/graphical_generate.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/graphical_hydropro.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/graphical_interpolate.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/graphical_minimization.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/graphical_open_minimization.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/graphical_sld.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/graphical_two_body_grid.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/graphical_xtal2sas.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/pgraphical_generate.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/progress_meter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui copying sassie/gui/rgraphical_generate.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/gui creating build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/align2_filter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/basis_filter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/best_filter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/center_filter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/complex_filter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/crysol_filter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/cryson_filter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/density_filter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/em_to_sans_filter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/generate_filter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/hydropro_filter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/input_filter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/interpolate_filter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/minimize_filter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/open_minimize_filter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/sld_filter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/two_body_grid_filter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface copying sassie/interface/xtal2sas_filter.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/interface creating build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol copying sassie/sasmol/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol copying sassie/sasmol/dcdio.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol copying sassie/sasmol/mask.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol copying sassie/sasmol/sascalc.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol copying sassie/sasmol/sasio.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol copying sassie/sasmol/sasmath.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol copying sassie/sasmol/sasmol.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol copying sassie/sasmol/sasop.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol copying sassie/sasmol/sasproperties.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol copying sassie/sasmol/sassubset.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol creating build/lib.macosx-10.6-x86_64-2.6/sassie/simulate copying sassie/simulate/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate creating build/lib.macosx-10.6-x86_64-2.6/sassie/core_testing creating build/lib.macosx-10.6-x86_64-2.6/sassie/core_testing/util copying sassie/core_testing/util/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/core_testing/util copying sassie/core_testing/util/env.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/core_testing/util copying sassie/core_testing/util/util.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/core_testing/util creating build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/namd copying sassie/simulate/namd/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/namd copying sassie/simulate/namd/minimize.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/namd copying sassie/simulate/namd/namd_minimize.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/namd copying sassie/simulate/namd/write_namd_input.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/namd creating build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/mdx copying sassie/simulate/mdx/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/mdx copying sassie/simulate/mdx/open_minimize.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/mdx copying sassie/simulate/mdx/write_mdx_input.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/mdx creating build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo copying sassie/simulate/monte_carlo/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo creating build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/constraints copying sassie/simulate/constraints/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/constraints copying sassie/simulate/constraints/constraints.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/constraints creating build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/rigid_body copying sassie/simulate/rigid_body/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/rigid_body creating build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/rigid_body/two_body_grid copying sassie/simulate/rigid_body/two_body_grid/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/rigid_body/two_body_grid copying sassie/simulate/rigid_body/two_body_grid/poverlap.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/rigid_body/two_body_grid copying sassie/simulate/rigid_body/two_body_grid/two_body_grid.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/rigid_body/two_body_grid creating build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo/monomer copying sassie/simulate/monte_carlo/monomer/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo/monomer copying sassie/simulate/monte_carlo/monomer/benergy.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo/monomer copying sassie/simulate/monte_carlo/monomer/dihedral.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo/monomer copying sassie/simulate/monte_carlo/monomer/energy.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo/monomer copying sassie/simulate/monte_carlo/monomer/filterparam.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo/monomer copying sassie/simulate/monte_carlo/monomer/initialize.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo/monomer copying sassie/simulate/monte_carlo/monomer/nbenergy.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo/monomer copying sassie/simulate/monte_carlo/monomer/nonbonding.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo/monomer copying sassie/simulate/monte_carlo/monomer/nrotate.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo/monomer copying sassie/simulate/monte_carlo/monomer/readparam.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo/monomer copying sassie/simulate/monte_carlo/monomer/readpsf.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo/monomer copying sassie/simulate/monte_carlo/monomer/step.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo/monomer creating build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo/complex copying sassie/simulate/monte_carlo/complex/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo/complex copying sassie/simulate/monte_carlo/complex/nmer_dihedral.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo/complex copying sassie/simulate/monte_carlo/complex/nmer_nrotate.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo/complex copying sassie/simulate/monte_carlo/complex/nmer_overlap_check.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/simulate/monte_carlo/complex creating build/lib.macosx-10.6-x86_64-2.6/sassie/scripts copying sassie/scripts/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/scripts copying sassie/scripts/extract_atoms.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/scripts copying sassie/scripts/extract_sequence.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/scripts copying sassie/scripts/igg_ma2.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/scripts copying sassie/scripts/listfiles.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/scripts copying sassie/scripts/ma2.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/scripts copying sassie/scripts/renumber_index_resid.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/scripts copying sassie/scripts/shift_index_resid.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/scripts copying sassie/scripts/sink.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/scripts creating build/lib.macosx-10.6-x86_64-2.6/sassie/scripts/driver_scripts copying sassie/scripts/driver_scripts/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/scripts/driver_scripts copying sassie/scripts/driver_scripts/crysol_driver.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/scripts/driver_scripts copying sassie/scripts/driver_scripts/hydropro_driver.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/scripts/driver_scripts copying sassie/scripts/driver_scripts/monomer_driver.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/scripts/driver_scripts creating build/lib.macosx-10.6-x86_64-2.6/sassie/tools copying sassie/tools/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/tools copying sassie/tools/align2.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/tools copying sassie/tools/center.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/tools copying sassie/tools/interpolate.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/tools creating build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions copying sassie/sasmol/extensions/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions creating build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/dcdio copying sassie/sasmol/extensions/dcdio/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/dcdio copying sassie/sasmol/extensions/dcdio/dcdio.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/dcdio copying sassie/sasmol/extensions/dcdio/setup_dcdio.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/dcdio copying sassie/sasmol/extensions/dcdio/test_dcdio.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/dcdio creating build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/mask copying sassie/sasmol/extensions/mask/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/mask copying sassie/sasmol/extensions/mask/mask.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/mask copying sassie/sasmol/extensions/mask/setup_mask.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/mask copying sassie/sasmol/extensions/mask/test_map_mask.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/mask creating build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/matrix_math copying sassie/sasmol/extensions/matrix_math/__init__.py -> build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/matrix_math running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext customize NAGFCompiler Could not locate executable f95 customize AbsoftFCompiler Could not locate executable f90 Could not locate executable f77 customize IBMFCompiler Could not locate executable xlf90 Could not locate executable xlf customize IntelFCompiler Could not locate executable ifort Could not locate executable ifc customize GnuFCompiler Could not locate executable g77 customize Gnu95FCompiler Found executable /sw/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using build_ext building 'sassie.sasmol._dcdio' extension compiling C sources C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes creating build/temp.macosx-10.6-x86_64-2.6 creating build/temp.macosx-10.6-x86_64-2.6/build creating build/temp.macosx-10.6-x86_64-2.6/build/src.macosx-10.6-x86_64-2.6 creating build/temp.macosx-10.6-x86_64-2.6/build/src.macosx-10.6-x86_64-2.6/sassie creating build/temp.macosx-10.6-x86_64-2.6/build/src.macosx-10.6-x86_64-2.6/sassie/sasmol creating build/temp.macosx-10.6-x86_64-2.6/build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions creating build/temp.macosx-10.6-x86_64-2.6/build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/dcdio creating build/temp.macosx-10.6-x86_64-2.6/sassie creating build/temp.macosx-10.6-x86_64-2.6/sassie/sasmol creating build/temp.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions creating build/temp.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/dcdio compile options: '-I/sw/lib/python2.6/site-packages/numpy/core/include -I/sw/lib/python2.6/site-packages/numpy/core/include -I/sw/include/python2.6 -c' gcc: sassie/sasmol/extensions/dcdio/dcdio.c sassie/sasmol/extensions/dcdio/dcdio.c: In function ‘read_dcdstep’: sassie/sasmol/extensions/dcdio/dcdio.c:447: warning: unused variable ‘j’ sassie/sasmol/extensions/dcdio/dcdio.c: In function ‘read_dcdheader’: sassie/sasmol/extensions/dcdio/dcdio.c:402: warning: ‘FREEINDEXES’ is used uninitialized in this function gcc: build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/dcdio/dcdio_wrap.c gcc -L/sw/lib -bundle -L/sw/lib/python2.6/config -lpython2.6 build/temp.macosx-10.6-x86_64-2.6/build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/dcdio/dcdio_wrap.o build/temp.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/dcdio/dcdio.o -o build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol/_dcdio.so building 'sassie.sasmol._mask' extension compiling C sources C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes creating build/temp.macosx-10.6-x86_64-2.6/build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/mask creating build/temp.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/mask compile options: '-I/sw/lib/python2.6/site-packages/numpy/core/include -I/sw/lib/python2.6/site-packages/numpy/core/include -I/sw/include/python2.6 -c' gcc: sassie/sasmol/extensions/mask/mask.c gcc: build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/mask/mask_wrap.c gcc -L/sw/lib -bundle -L/sw/lib/python2.6/config -lpython2.6 build/temp.macosx-10.6-x86_64-2.6/build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/mask/mask_wrap.o build/temp.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/mask/mask.o -o build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol/_mask.so building 'sassie.sasmol.foverlap' extension compiling C sources C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes compile options: '-I/sw/lib/python2.6/site-packages/numpy/core/include -Ibuild/src.macosx-10.6-x86_64-2.6 -I/sw/lib/python2.6/site-packages/numpy/core/include -I/sw/include/python2.6 -c' gcc: build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/foverlapmodule.c gcc: build/src.macosx-10.6-x86_64-2.6/fortranobject.c compiling Fortran sources Fortran f77 compiler: /sw/bin/gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /sw/bin/gfortran -Wall -fno-second-underscore -fPIC -O3 -funroll-loops Fortran fix compiler: /sw/bin/gfortran -Wall -ffixed-form -fno-second-underscore -Wall -fno-second-underscore -fPIC -O3 -funroll-loops creating build/temp.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/overlap compile options: '-I/sw/lib/python2.6/site-packages/numpy/core/include -Ibuild/src.macosx-10.6-x86_64-2.6 -I/sw/lib/python2.6/site-packages/numpy/core/include -I/sw/include/python2.6 -c' gfortran:f77: sassie/sasmol/extensions/overlap/foverlap.f /sw/bin/gfortran -Wall -Wall -undefined dynamic_lookup -bundle build/temp.macosx-10.6-x86_64-2.6/build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/foverlapmodule.o build/temp.macosx-10.6-x86_64-2.6/build/src.macosx-10.6-x86_64-2.6/fortranobject.o build/temp.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/overlap/foverlap.o -L/sw/lib/gcc4.4/lib/gcc/x86_64-apple-darwin10.4.1/4.4.4 -lgfortran -o build/lib.macosx-10.6-x86_64-2.6/sassie/sasmol/foverlap.so building 'sassie.sasmol.matrix_math' extension compiling C sources C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes compile options: '-I/sw/lib/python2.6/site-packages/numpy/core/include -Ibuild/src.macosx-10.6-x86_64-2.6 -I/sw/lib/python2.6/site-packages/numpy/core/include -I/sw/include/python2.6 -c' gcc: build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/matrix_mathmodule.c gcc: build/src.macosx-10.6-x86_64-2.6/fortranobject.c compiling Fortran sources Fortran f77 compiler: /sw/bin/gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /sw/bin/gfortran -Wall -fno-second-underscore -fPIC -O3 -funroll-loops Fortran fix compiler: /sw/bin/gfortran -Wall -ffixed-form -fno-second-underscore -Wall -fno-second-underscore -fPIC -O3 -funroll-loops creating build/temp.macosx-10.6-x86_64-2.6/sassie/sasmol/extensions/matrix_math compile options: '-I/sw/lib/python2.6/site-packages/numpy/core/include -Ibuild/src.macosx-10.6-x86_64-2.6 -I/sw/lib/python2.6/site-packages/numpy/core/include -I/sw/include/python2.6 -c' gfortran:f77: sassie/sasmol/extensions/matrix_math/matrix_math.f sassie/sasmol/extensions/matrix_math/matrix_math.f:5.22: integer dim_a1,dim_a2,dim_b2 1 Error: Symbol 'dim_a1' at (1) already has basic type of REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:2.27: double precision a(dim_a1,dim_a2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:3.27: double precision b(dim_a2,dim_b2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:4.27: double precision c(dim_a1,dim_b2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:2.27: double precision a(dim_a1,dim_a2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:3.27: double precision b(dim_a2,dim_b2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:4.27: double precision c(dim_a1,dim_b2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:13.27: do 99, j=1,dim_b2 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer sassie/sasmol/extensions/matrix_math/matrix_math.f:12.18: do 98,i=1,dim_a1 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer sassie/sasmol/extensions/matrix_math/matrix_math.f:22.28: do 100, k=1,dim_a2 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer sassie/sasmol/extensions/matrix_math/matrix_math.f:20.22: do 200,j=1,dim_b2 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer sassie/sasmol/extensions/matrix_math/matrix_math.f:19.19: do 300,i=1,dim_a1 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer sassie/sasmol/extensions/matrix_math/matrix_math.f:5.22: integer dim_a1,dim_a2,dim_b2 1 Error: Symbol 'dim_a1' at (1) already has basic type of REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:2.27: double precision a(dim_a1,dim_a2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:3.27: double precision b(dim_a2,dim_b2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:4.27: double precision c(dim_a1,dim_b2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:2.27: double precision a(dim_a1,dim_a2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:3.27: double precision b(dim_a2,dim_b2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:4.27: double precision c(dim_a1,dim_b2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:13.27: do 99, j=1,dim_b2 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer sassie/sasmol/extensions/matrix_math/matrix_math.f:12.18: do 98,i=1,dim_a1 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer sassie/sasmol/extensions/matrix_math/matrix_math.f:22.28: do 100, k=1,dim_a2 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer sassie/sasmol/extensions/matrix_math/matrix_math.f:20.22: do 200,j=1,dim_b2 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer sassie/sasmol/extensions/matrix_math/matrix_math.f:19.19: do 300,i=1,dim_a1 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "sassie.sasmol._dcdio" sources building extension "sassie.sasmol._mask" sources building extension "sassie.sasmol.foverlap" sources f2py options: [] adding 'build/src.macosx-10.6-x86_64-2.6/fortranobject.c' to sources. adding 'build/src.macosx-10.6-x86_64-2.6' to include_dirs. building extension "sassie.sasmol.matrix_math" sources f2py options: [] adding 'build/src.macosx-10.6-x86_64-2.6/fortranobject.c' to sources. adding 'build/src.macosx-10.6-x86_64-2.6' to include_dirs. building extension "sassie.analyze.cube" sources building extension "sassie.analyze.renorm" sources building extension "sassie.simulate.rigid_body.two_body_grid.foverlap" sources f2py options: [] adding 'build/src.macosx-10.6-x86_64-2.6/fortranobject.c' to sources. adding 'build/src.macosx-10.6-x86_64-2.6' to include_dirs. building extension "sassie.simulate.monte_carlo.monomer.overlap" sources building data_files sources build_src: building npy-pkg config files running build_py running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext customize NAGFCompiler Could not locate executable f95 customize AbsoftFCompiler Could not locate executable f90 Could not locate executable f77 customize IBMFCompiler Could not locate executable xlf90 Could not locate executable xlf customize IntelFCompiler Could not locate executable ifort Could not locate executable ifc customize GnuFCompiler Could not locate executable g77 customize Gnu95FCompiler Found executable /sw/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using build_ext building 'sassie.sasmol.matrix_math' extension compiling C sources C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes compile options: '-I/sw/lib/python2.6/site-packages/numpy/core/include -Ibuild/src.macosx-10.6-x86_64-2.6 -I/sw/lib/python2.6/site-packages/numpy/core/include -I/sw/include/python2.6 -c' gcc: build/src.macosx-10.6-x86_64-2.6/sassie/sasmol/matrix_mathmodule.c gcc: build/src.macosx-10.6-x86_64-2.6/fortranobject.c compiling Fortran sources Fortran f77 compiler: /sw/bin/gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /sw/bin/gfortran -Wall -fno-second-underscore -fPIC -O3 -funroll-loops Fortran fix compiler: /sw/bin/gfortran -Wall -ffixed-form -fno-second-underscore -Wall -fno-second-underscore -fPIC -O3 -funroll-loops compile options: '-I/sw/lib/python2.6/site-packages/numpy/core/include -Ibuild/src.macosx-10.6-x86_64-2.6 -I/sw/lib/python2.6/site-packages/numpy/core/include -I/sw/include/python2.6 -c' gfortran:f77: sassie/sasmol/extensions/matrix_math/matrix_math.f sassie/sasmol/extensions/matrix_math/matrix_math.f:5.22: integer dim_a1,dim_a2,dim_b2 1 Error: Symbol 'dim_a1' at (1) already has basic type of REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:2.27: double precision a(dim_a1,dim_a2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:3.27: double precision b(dim_a2,dim_b2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:4.27: double precision c(dim_a1,dim_b2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:2.27: double precision a(dim_a1,dim_a2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:3.27: double precision b(dim_a2,dim_b2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:4.27: double precision c(dim_a1,dim_b2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:13.27: do 99, j=1,dim_b2 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer sassie/sasmol/extensions/matrix_math/matrix_math.f:12.18: do 98,i=1,dim_a1 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer sassie/sasmol/extensions/matrix_math/matrix_math.f:22.28: do 100, k=1,dim_a2 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer sassie/sasmol/extensions/matrix_math/matrix_math.f:20.22: do 200,j=1,dim_b2 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer sassie/sasmol/extensions/matrix_math/matrix_math.f:19.19: do 300,i=1,dim_a1 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer sassie/sasmol/extensions/matrix_math/matrix_math.f:5.22: integer dim_a1,dim_a2,dim_b2 1 Error: Symbol 'dim_a1' at (1) already has basic type of REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:2.27: double precision a(dim_a1,dim_a2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:3.27: double precision b(dim_a2,dim_b2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:4.27: double precision c(dim_a1,dim_b2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:2.27: double precision a(dim_a1,dim_a2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:3.27: double precision b(dim_a2,dim_b2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:4.27: double precision c(dim_a1,dim_b2) 1 Error: Expression at (1) must be of INTEGER type, found REAL sassie/sasmol/extensions/matrix_math/matrix_math.f:13.27: do 99, j=1,dim_b2 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer sassie/sasmol/extensions/matrix_math/matrix_math.f:12.18: do 98,i=1,dim_a1 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer sassie/sasmol/extensions/matrix_math/matrix_math.f:22.28: do 100, k=1,dim_a2 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer sassie/sasmol/extensions/matrix_math/matrix_math.f:20.22: do 200,j=1,dim_b2 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer sassie/sasmol/extensions/matrix_math/matrix_math.f:19.19: do 300,i=1,dim_a1 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer TESTING INSTALLATION INSTALLATION COMPLETE >> you can start sassie by running the script >> "sassie_gui.py" which is in a directory called >> "testing" in this directory >> you should copy this file to your own working directory >> to work on your own projects