sassie.analyze
sassie.analyze.apbs
sassie.analyze.chi_helper
sassie.analyze.chi_square_filter
sassie.analyze.cube
sassie.analyze.density_driver
sassie.analyze.density_plot
sassie.analyze.filter_driver
sassie.analyze.gsct_anal
sassie.analyze.gsct_gen_weight
sassie.analyze.renorm
sassie.analyze.write_apbs_input
sassie.build
sassie.build.fix_pdb
sassie.build.header_reader
sassie.build.pandoctable
sassie.build.pdb_record_reader
sassie.build.pdbreport
sassie.build.pdbscan
sassie.build.pdbscan_report
sassie.build.pdbscan_utils
sassie.build.reconcile
sassie.build.sasmol_scan
sassie.calculate
sassie.calculate.em_to_sans
sassie.calculate.gcrysol
sassie.calculate.gcryson
sassie.calculate.ghydropro
sassie.calculate.gsct_calc
sassie.calculate.gsct_opt
sassie.calculate.gxtal2sas
sassie.calculate.modified_scipy_interpolate
sassie.calculate.sascalc
sassie.calculate.sld_mol
sassie.core_testing
sassie.core_testing.util
sassie.core_testing.util.FileCmp
sassie.core_testing.util.env
sassie.core_testing.util.generate_huge_dcd_onthefly
sassie.core_testing.util.util
sassie.gui
sassie.gui.aprogTable
sassie.gui.graphical_align
sassie.gui.graphical_apbs
sassie.gui.graphical_chi_square_filter
sassie.gui.graphical_complex_monte_carlo
sassie.gui.graphical_contrast_calculator
sassie.gui.graphical_coordinate_tools
sassie.gui.graphical_crysol
sassie.gui.graphical_cryson
sassie.gui.graphical_data_interpolation
sassie.gui.graphical_density_plot
sassie.gui.graphical_dna_monte_carlo
sassie.gui.graphical_docking
sassie.gui.graphical_em_to_sans
sassie.gui.graphical_energy_minimization
sassie.gui.graphical_hydropro
sassie.gui.graphical_merge_utilities
sassie.gui.graphical_monomer_monte_carlo
sassie.gui.graphical_open_minimization
sassie.gui.graphical_sascalc
sassie.gui.graphical_sct_anal
sassie.gui.graphical_sct_calc
sassie.gui.graphical_sct_opt
sassie.gui.graphical_sld_mol
sassie.gui.graphical_torsion_angle_md
sassie.gui.graphical_two_body_grid
sassie.gui.graphical_xtal2sas
sassie.gui.progress_meter
sassie.installer
sassie.interface
sassie.interface.align_filter
sassie.interface.apbs_filter
sassie.interface.basis_filter
sassie.interface.chi_square_filter_filter
sassie.interface.complex_filter
sassie.interface.contrast_calculator_filter
sassie.interface.coor_tools_filter
sassie.interface.crysol_filter
sassie.interface.cryson_filter
sassie.interface.density_plot_filter
sassie.interface.em_to_sans_filter
sassie.interface.extract_utilities_filter
sassie.interface.generate_filter
sassie.interface.hydropro_filter
sassie.interface.input_filter
sassie.interface.interpolate_filter
sassie.interface.merge_utilities_filter
sassie.interface.minimize_filter
sassie.interface.open_minimize_filter
sassie.interface.pdbscan_filter
sassie.interface.sascalc_filter
sassie.interface.sct_anal_filter
sassie.interface.sct_calc_filter
sassie.interface.sct_gen_weight_filter
sassie.interface.sct_opt_filter
sassie.interface.sld_mol_filter
sassie.interface.torsion_angle_md_filter
sassie.interface.two_body_grid_filter
sassie.interface.xtal2sas_filter
sassie.remove_sassie
sassie.sasconfig
sassie.sasmol
sassie.sasmol._dcdio
sassie.sasmol._mask
sassie.sasmol._sasview_vmd
sassie.sasmol.dcdio
sassie.sasmol.extensions
sassie.sasmol.extensions.dcdio
sassie.sasmol.extensions.dcdio.dcdio
sassie.sasmol.extensions.dcdio.setup_dcdio
sassie.sasmol.extensions.dcdio.test_dcdio
sassie.sasmol.extensions.mask
sassie.sasmol.extensions.mask.mask
sassie.sasmol.extensions.mask.setup_mask
sassie.sasmol.extensions.mask.test_map_mask
sassie.sasmol.extensions.matrix_math
sassie.sasmol.extensions.matrix_math.setup_matrix_multiply
sassie.sasmol.extensions.sasview
sassie.sasmol.extensions.sasview.sasview_vmd
sassie.sasmol.extensions.sasview.setup_sasview_vmd
sassie.sasmol.foverlap
sassie.sasmol.mask
sassie.sasmol.matrix_math
sassie.sasmol.sascalc
sassie.sasmol.sascontrast
sassie.sasmol.sasio
sassie.sasmol.sasmath
sassie.sasmol.sasmol
sassie.sasmol.sasop
sassie.sasmol.saspdbrx
sassie.sasmol.sasproperties
sassie.sasmol.sassubset
sassie.sasmol.sasutil
sassie.sasmol.sasview
sassie.sasmol.sasview_vmd
sassie.scripts
sassie.scripts.block_average
sassie.scripts.ca_distances
sassie.scripts.calc_com_diffusion
sassie.scripts.calc_rg_from_dcd
sassie.scripts.check_rg
sassie.scripts.combine_x2_rg_data_files
sassie.scripts.convert_amino_acids
sassie.scripts.dcdspecfilter
sassie.scripts.distribute
sassie.scripts.driver_scripts
sassie.scripts.driver_scripts.align_driver
sassie.scripts.driver_scripts.center_driver
sassie.scripts.driver_scripts.crysol_driver
sassie.scripts.driver_scripts.cryson_driver
sassie.scripts.driver_scripts.density_driver
sassie.scripts.driver_scripts.docking_driver
sassie.scripts.driver_scripts.em_driver
sassie.scripts.driver_scripts.filter_driver
sassie.scripts.driver_scripts.generate_driver
sassie.scripts.driver_scripts.hydropro_driver
sassie.scripts.driver_scripts.interpolate_driver
sassie.scripts.driver_scripts.minimization_driver
sassie.scripts.driver_scripts.monomer_driver
sassie.scripts.driver_scripts.open_minimization_driver
sassie.scripts.driver_scripts.sld_driver
sassie.scripts.driver_scripts.xtal2sas_driver
sassie.scripts.driver_scripts.z
sassie.scripts.extract_atoms
sassie.scripts.extract_largest_x2_and_rg_from_x2file
sassie.scripts.extract_sequence
sassie.scripts.fab_distribution
sassie.scripts.filter_trajectory
sassie.scripts.find_min_max
sassie.scripts.fix_pdb
sassie.scripts.get_hydrogen_dcd
sassie.scripts.grid_trajectory
sassie.scripts.igg_ma2
sassie.scripts.listfiles
sassie.scripts.ma2
sassie.scripts.measure_dihedral
sassie.scripts.merge_xtal2sas_runs
sassie.scripts.prepare_for_iqt
sassie.scripts.renumber_index_resid
sassie.scripts.rmsd_between_to_frames_entire_dcd
sassie.scripts.sastest
sassie.scripts.shift_index_resid
sassie.scripts.sink
sassie.scripts.survey_distances
sassie.scripts.survey_vdw
sassie.scripts.test_sasview
sassie.scripts.torus
sassie.scripts.write_deoxy_patches
sassie.simulate
sassie.simulate.constraints
sassie.simulate.constraints.constraints
sassie.simulate.energy
sassie.simulate.energy.angle_energy
sassie.simulate.energy.atom_force_field
sassie.simulate.energy.dihedral_energy
sassie.simulate.energy.electrostatics
sassie.simulate.energy.extensions
sassie.simulate.energy.extensions.non_bonding
sassie.simulate.energy.extensions.non_bonding.setup_electrostatics
sassie.simulate.energy.extensions.non_bonding.setup_non_bonding_intermolecular
sassie.simulate.energy.extensions.non_bonding.setup_vdw
sassie.simulate.energy.filterparam
sassie.simulate.energy.initialize
sassie.simulate.energy.non_bonding_intermolecular
sassie.simulate.energy.python_energy_calc
sassie.simulate.energy.readparam
sassie.simulate.energy.readpsf
sassie.simulate.energy.vdw
sassie.simulate.mdx
sassie.simulate.mdx.open_minimize
sassie.simulate.mdx.write_mdx_input
sassie.simulate.monte_carlo
sassie.simulate.monte_carlo.complex
sassie.simulate.monte_carlo.complex.interres
sassie.simulate.monte_carlo.complex.nmer_dihedral
sassie.simulate.monte_carlo.complex.nmer_nrotate
sassie.simulate.monte_carlo.complex.nmer_overlap_check
sassie.simulate.monte_carlo.ds_dna_monte_carlo
sassie.simulate.monte_carlo.ds_dna_monte_carlo.collision
sassie.simulate.monte_carlo.ds_dna_monte_carlo.dna_mc_driver
sassie.simulate.monte_carlo.ds_dna_monte_carlo.ds_dna_monte_carlo
sassie.simulate.monte_carlo.ds_dna_monte_carlo.extensions
sassie.simulate.monte_carlo.ds_dna_monte_carlo.extensions.energy
sassie.simulate.monte_carlo.ds_dna_monte_carlo.extensions.energy.dna_electrostatics
sassie.simulate.monte_carlo.ds_dna_monte_carlo.extensions.energy.plot_switch
sassie.simulate.monte_carlo.ds_dna_monte_carlo.extensions.energy.setup_collision
sassie.simulate.monte_carlo.ds_dna_monte_carlo.extensions.energy.setup_coulomb
sassie.simulate.monte_carlo.ds_dna_monte_carlo.special
sassie.simulate.monte_carlo.ds_dna_monte_carlo.special.dna_dihedral
sassie.simulate.monte_carlo.ds_dna_monte_carlo.special.dna_electrostatics
sassie.simulate.monte_carlo.ds_dna_monte_carlo.special.driven_dna_move
sassie.simulate.monte_carlo.ds_dna_monte_carlo.special.graphical_tamd
sassie.simulate.monte_carlo.ds_dna_monte_carlo.special.input_filter
sassie.simulate.monte_carlo.ds_dna_monte_carlo.special.survey_distances
sassie.simulate.monte_carlo.monomer
sassie.simulate.monte_carlo.monomer.dihedral_monte_carlo
sassie.simulate.monte_carlo.monomer.dihedral_rotate
sassie.simulate.monte_carlo.monomer.overlap
sassie.simulate.monte_carlo.monomer.pairs
sassie.simulate.monte_carlo.monomer.step
sassie.simulate.monte_carlo.monomer.vdw_overlap
sassie.simulate.namd
sassie.simulate.namd.namd_minimize
sassie.simulate.namd.prepend_namd_input
sassie.simulate.namd.write_namd_input
sassie.simulate.openmm
sassie.simulate.openmm.openmm
sassie.simulate.rigid_body
sassie.simulate.rigid_body.docking
sassie.simulate.rigid_body.docking.construct
sassie.simulate.rigid_body.docking.docking
sassie.simulate.rigid_body.two_body_grid
sassie.simulate.rigid_body.two_body_grid.foverlap
sassie.simulate.rigid_body.two_body_grid.poverlap
sassie.simulate.rigid_body.two_body_grid.two_body_grid
sassie.simulate.torsion_angle_md
sassie.simulate.torsion_angle_md.torsion_angle_md
sassie.simulate.torsion_angle_md.write_tamd_input
sassie.tools
sassie.tools.align
sassie.tools.contrast_calculator
sassie.tools.coor_tools
sassie.tools.data_interpolation
sassie.tools.extract_utilities
sassie.tools.merge_utilities
sassie.tools.old_merge_utilities
sassie.upgrade
sassie.util
sassie.util.basis_to_python
sassie.util.folder_management