DELTA 1896 0 470
SVN N  d .   v
~LSYSINSTALLDIRINC=/usr/local/core_libraries/include/
SYSINSTALLDIRLIB=/usr/local/core_libraries/lib/
HEADERS_SYSINSTALL=$(addsuffix .h,$(addprefix $(SYSOBJECTS_SYSINSTALL=$(addsuffix .o,$(addprefix $(SYSINC)*.h $(SYSINSTALLDIRINC)
	cp -f $(DIRLIB)*.o $(INSTALLDIRLIB)
	cp -f $(DIRLIB)*.o $(SYSINSTALLDIRLIB)

.PHONY: clean
clean:
	rm -rf $(OBJECTS) $(LIB)
	rm -rf $(HEADERS_INSTALL)
	rm -rf $(HEADERS_SYSINSTALL)
	rm -rf $(OBJECTS_INSTALL)
	rm -rf $(OBJECTS_SYSENDREP
DELTA 1896 494 455
SVN 5k A ^ A: /X i 	iSYSINSTALLDIRINC=/usr/local/core_libraries/include/
SYSINSTALLDIRLIB=/usr/local/core_librariesHEADERS_SYSINSTALL=$(addsuffix .h,$(addprefix $(SYSCUDA_OBJECTS_SYSINSTALL=$(addsuffix .o,$(addprefix $(SYSINC)*.h $(SYSINSTALLDIRINC)
	cp -f $(DIRLIB)*.o $(INSTALLDIRLIB)
	cp -f $(DIRLIB)*.o $(SYSINSTALLDIRLIB)

.PHONY: clean
clean:
	rm -rf $(CUDA_OBJECTS) $(CUDA_LIB)
	rm -rf $(CUDA_HEADERS_INSTALL)
	rm -rf $(CUDA_HEADERS_SYSINSTALL)
	rm -rf $(CUDA_OBJECTS_INSTALL)
	rm -rf $(CUDA_OBJECTS_SYSENDREP
DELTA 1893 5132 1774
SVN $#
	 *  y+ ENDREP
DELTA 1897 0 26
SVN {T,o+ l  k ~H F}A ^^S "S Y"3x^j0 
KYMƚqlc7fd^-YhdB"dM"CrtG]lJV{[hc}ӵTÜS&gv0q6?Yi}{.Z)0`\!3Aac,ק	8[ .wDc޺i "ֵ|21YtAENDREP
DELTA 1895 502 152
SVN u
 G 2Ccuda_path__ = os.path.join(os.path.sep, 'share', 'apps', 'local', 'cuda-6.0')
__cuda_path__ = os.path.join(os.path.sep, 'usr', 'local', 'cuda-6.0')ENDREP
DELTA 1895 678 43
SVN w4< a  ^ p:#### OPEN:  need to grab sasconfig.py value for this path!!!
#### OPEN:  need to grab sasconfig.py value for this path!!!
#### OPEN:  need to grab sasconfig.py value for this path!!!

core_libraries_include = os.path.join(os.path.sep, 'usr', 'local', 'core_libraries', 'include',include_dirs=core_libraries_includeENDREP
id: 9-1897.0.r1898/2025
type: file
pred: 9-1897.0.r1897/51
count: 1
text: 1898 0 504 1297 8bd5de63b28e466b8f207cd961e673d8 2451208c66452d09bce607528867a6a18666a37b 1897-1gp/_7
props: 53 14351222 30 0 4160c74de5f4e580dc15660c798ff9fc
cpath: /sassie_2.0/trunk/sassie/core_libraries/cpp/overlap/Makefile
copyroot: 0 /

PLAIN
K 8
Makefile
V 24
file 9-1897.0.r1898/2025
K 7
include
V 22
dir c-1897.0.r1897/644
K 3
lib
V 22
dir g-1897.0.r1897/821
K 3
src
V 23
dir h-1897.0.r1897/1247
END
ENDREP
id: 7-1897.0.r1898/2514
type: dir
pred: 7-1897.0.r1897/1593
count: 1
text: 1898 2341 160 0 8cb909aeeb62f9c7e85f324c055aadaa
cpath: /sassie_2.0/trunk/sassie/core_libraries/cpp/overlap
copyroot: 0 /

PLAIN
K 7
overlap
V 23
dir 7-1897.0.r1898/2514
END
ENDREP
id: 5-1897.0.r1898/2770
type: dir
pred: 5-1897.0.r1897/1823
count: 1
text: 1898 2712 45 0 7c53bc1fdf17e707d6d47b1ba8e0624b
cpath: /sassie_2.0/trunk/sassie/core_libraries/cpp
copyroot: 0 /

id: o-1897.0.r1898/2959
type: file
pred: o-1897.0.r1897/1986
count: 1
text: 1898 528 533 1717 6a82b8341a4a9983bae2065ffc3a5163 a4c55692c7ee99fd3e24d3ff83cfd4cbdfd8150f 1897-1gp/_a
props: 53 14351222 30 0 4160c74de5f4e580dc15660c798ff9fc
cpath: /sassie_2.0/trunk/sassie/core_libraries/cuda/overlap/Makefile
copyroot: 0 /

PLAIN
K 8
Makefile
V 24
file o-1897.0.r1898/2959
K 7
include
V 23
dir r-1897.0.r1897/3748
K 3
lib
V 24
dir 11-1897.0.r1897/3929
K 3
src
V 24
dir 12-1897.0.r1897/4813
END
ENDREP
id: m-1897.0.r1898/3457
type: dir
pred: m-1897.0.r1897/5168
count: 1
text: 1898 3280 164 0 11bb99f6f95fba06c82974ab439fecf2
cpath: /sassie_2.0/trunk/sassie/core_libraries/cuda/overlap
copyroot: 0 /

PLAIN
K 7
overlap
V 23
dir m-1897.0.r1898/3457
END
ENDREP
id: l-1897.0.r1898/3714
type: dir
pred: l-1897.0.r1897/5399
count: 1
text: 1898 3656 45 0 9b660c58cc4bccc9b9a3d80c1565e3e4
cpath: /sassie_2.0/trunk/sassie/core_libraries/cuda
copyroot: 0 /

PLAIN
K 3
cpp
V 23
dir 5-1897.0.r1898/2770
K 4
cuda
V 23
dir l-1897.0.r1898/3714
K 7
fortran
V 24
dir 18-1897.0.r1897/5563
K 7
include
V 24
dir 19-1897.0.r1897/5677
K 3
lib
V 24
dir 1a-1897.0.r1897/5791
K 3
mpi
V 24
dir 1b-1897.0.r1897/5901
K 6
opencl
V 24
dir 1c-1897.0.r1897/6011
END
ENDREP
id: 3-1897.0.r1898/4197
type: dir
pred: 3-1897.0.r1897/6417
count: 1
text: 1898 3904 280 0 325a0a918e0a3afcd37e8c79b871ee47
cpath: /sassie_2.0/trunk/sassie/core_libraries
copyroot: 0 /

id: 17-1893.0.r1898/4383
type: file
pred: 17-1893.0.r1893/83730
count: 1
text: 1898 1087 22 6307 f7111e8ab2acfdaba8195e41a123242d 48f81257b68b43c46a31db5e983ced72777305b3 1897-1gp/_f
cpath: /sassie_2.0/trunk/sassie/simulate/monte_carlo/extensions/overlap/overlap_extension.cpp
copyroot: 0 /

id: 19-1893.0.r1898/4675
type: file
pred: 19-1893.0.r1897/6577
count: 3
text: 1898 1137 295 2900 2c12cc3d964e4afa25198c19693e05dc 1658284822795fddd0cc9bfb302657f7c997f49e 1897-1gp/_g
cpath: /sassie_2.0/trunk/sassie/simulate/monte_carlo/extensions/overlap/setup_overlap.py
copyroot: 0 /

PLAIN
K 21
overlap_extension.cpp
V 25
file 17-1893.0.r1898/4383
K 16
setup_overlap.py
V 25
file 19-1893.0.r1898/4675
K 4
test
V 25
dir 1b-1893.0.r1893/85229
END
ENDREP
id: 6-1893.0.r1898/5130
type: dir
pred: 6-1893.0.r1897/7030
count: 3
text: 1898 4962 155 0 3ca9d5eb8af18c2cd002efaef23c4cc8
cpath: /sassie_2.0/trunk/sassie/simulate/monte_carlo/extensions/overlap
copyroot: 0 /

PLAIN
K 11
__init__.py
V 23
file 6-1795.0.r1795/921
K 9
collision
V 25
dir f-1773.0-1781.r1781/0
K 7
overlap
V 23
dir 6-1893.0.r1898/5130
K 5
pairs
V 30
dir 11y-1649.0-1780.r1780/2708
K 11
vdw_overlap
V 30
dir 128-1649.1-1782.r1782/1316
END
ENDREP
id: e-1773.0.r1898/5589
type: dir
pred: e-1773.0.r1897/7489
count: 10
text: 1898 5341 235 0 1a21e93c6f9ba379f7a0c971640f0bec
props: 1779 782 38 0 c485f71a14486f14b1577d4070995475
cpath: /sassie_2.0/trunk/sassie/simulate/monte_carlo/extensions
copyroot: 0 /

PLAIN
K 11
__init__.py
V 29
file wh-1649.0.r1649/84666039
K 8
asa2.pdb
V 21
file 5-1773.0.r1773/0
K 8
asa2.psf
V 21
file 5-1794.0.r1794/0
K 26
double_stranded_nucleic.py
V 24
file c-1773.0.r1888/1558
K 10
extensions
V 23
dir e-1773.0.r1898/5589
K 9
graveyard
V 23
dir 5-1774.0.r1892/1021
K 12
group_psf.py
V 23
file 5-1839.0.r1886/226
K 12
gui_mimic.py
V 29
file 6-1663.0-1776.r1895/6898
K 23
gui_mimic_ds_nucleic.py
V 29
file b-1755.1-1776.r1888/1831
K 14
monte_carlo.py
V 29
file a-1656.3-1776.r1892/1221
K 21
old_monte_carlo_files
V 23
dir 5-1788.0.r1799/2587
K 19
protein_dihedral.py
V 29
file 8-1674.5-1776.r1892/1555
K 11
ten_mer.pdb
V 23
file 7-1796.0.r1796/630
K 11
ten_mer.psf
V 24
file 8-1856.0.r1856/1478
K 8
todo.txt
V 28
file 9-1678.6-1776.r1800/223
END
ENDREP
id: wg-1649.0.r1898/6621
type: dir
pred: wg-1649.0.r1897/8520
count: 95
text: 1898 5847 761 0 6921a9ec5380056b0a8351844b0e049f
props: 1886 1587 282 0 95ad28281ef4a20d37ec56568d53d32f
cpath: /sassie_2.0/trunk/sassie/simulate/monte_carlo
copyroot: 0 /

PLAIN
K 11
__init__.py
V 29
file v3-1649.0.r1649/84659147
K 11
constraints
V 28
dir v6-1649.0.r1649/84659972
K 6
energy
V 25
dir vc-1649.0.r1731/15220
K 11
monte_carlo
V 24
dir wg-1649.0.r1898/6621
K 6
openmm
V 25
dir 12k-1649.0.r1895/8628
K 10
rigid_body
V 25
dir 12q-1649.0.r1787/7921
K 4
tamd
V 29
dir 130-1649.0.r1649/84705886
END
ENDREP
id: v2-1649.0.r1898/7214
type: dir
pred: v2-1649.0.r1897/9113
count: 97
text: 1898 6872 329 0 357a039e945a6f36746c519c539101c9
cpath: /sassie_2.0/trunk/sassie/simulate
copyroot: 0 /

id: 8-1661.0-1779.r1898/7397
type: file
pred: 8-1661.0-1779.r1895/9345
count: 7
text: 1898 1455 172 396 b6c6d2045414f571e98cee65abece6b3 e6462f4aa043cbf4e630577fba7ad7f8d26caa80 1897-1gp/_i
cpath: /sassie_2.0/trunk/sassie/util/sasconfig.py
copyroot: 1779 /sassie_2.0/trunk/sassie/util/sasconfig.py

PLAIN
K 11
__init__.py
V 24
file g-1795.0.r1795/4938
K 18
basis_to_python.py
V 29
file 8-1773.2-1787.r1787/9517
K 19
module_utilities.py
V 29
file g-1656.0-1784.r1784/6008
K 12
sasconfig.py
V 29
file 8-1661.0-1779.r1898/7397
END
ENDREP
id: b-1779.0.r1898/7932
type: dir
pred: b-1779.0.r1895/9878
count: 6
text: 1898 7696 223 0 e4b0599fea7d48c64697142077835079
cpath: /sassie_2.0/trunk/sassie/util
copyroot: 0 /

PLAIN
K 11
__init__.py
V 23
file q-1649.0.r1779/548
K 7
analyze
V 22
dir t-1649.0.r1785/894
K 5
build
V 28
dir 1l-1649.0.r1649/84498686
K 9
calculate
V 24
dir 21-1649.0.r1785/1671
K 14
core_libraries
V 23
dir 3-1897.0.r1898/4197
K 12
distribution
V 28
dir 2f-1649.0.r1649/84508790
K 3
gui
V 24
dir 3r-1649.0.r1787/3816
K 9
interface
V 24
dir 4v-1649.0.r1787/5423
K 8
pyqt_gui
V 22
dir 3-1655.0.r1686/894
K 6
sasmol
V 24
dir 5x-1649.0.r1895/5487
K 10
sasmol_cpp
V 28
dir 91-1649.0.r1649/84658982
K 7
scripts
V 27
dir e-1650.0.r1650/81137116
K 8
simulate
V 24
dir v2-1649.0.r1898/7214
K 5
tools
V 25
dir 138-1649.0.r1804/4214
K 4
util
V 23
dir b-1779.0.r1898/7932
END
ENDREP
id: p-1649.0.r1898/8781
type: dir
pred: p-1649.0.r1897/9969
count: 107
text: 1898 8108 660 0 60760d67f3ca1bac59afbf756fe1cca7
cpath: /sassie_2.0/trunk/sassie
copyroot: 0 /

id: 13m-1649.0.r1898/8954
type: file
pred: 13m-1649.0.r1895/10854
count: 7
text: 1898 1653 347 7860 0f05c066c16ac196c0326a01c9ed7673 cec70a59898cb415105a2005f47c5287128d9b9a 1897-1gp/_j
cpath: /sassie_2.0/trunk/setup.py
copyroot: 0 /

PLAIN
K 14
GNULICENSE.TXT
V 28
file 2-1649.0.r1649/84490364
K 8
MANIFEST
V 28
file 5-1649.0.r1649/84490577
K 11
MANIFEST.in
V 28
file 7-1649.0.r1649/84490782
K 6
README
V 28
file 9-1649.0.r1649/84490987
K 11
__init__.py
V 23
file b-1649.0.r1873/223
K 12
installer.py
V 24
file d-1649.0.r1729/2123
K 18
license.header.txt
V 28
file f-1649.0.r1649/84491668
K 20
license.terminal.txt
V 28
file h-1649.0.r1649/84491885
K 12
licenses.txt
V 28
file j-1649.0.r1649/84492100
K 16
remove_sassie.py
V 28
file l-1649.0.r1649/84492315
K 6
sassie
V 23
dir p-1649.0.r1898/8781
K 8
setup.py
V 26
file 13m-1649.0.r1898/8954
K 7
testing
V 26
dir 13o-1649.0.r1787/14128
K 8
todo.txt
V 30
file 1fg-1649.0.r1649/84773118
K 10
upgrade.py
V 30
file 1fi-1649.0.r1649/84773331
END
ENDREP
id: 1-47.0.r1898/9953
type: dir
pred: 1-47.0.r1897/10908
count: 109
text: 1898 9189 751 0 d8747771aee600e8a68393c32b30fea1
props: 1650 81142826 61 0 570f49625ca8d1f649d369a530cd1839
cpath: /sassie_2.0/trunk
copyroot: 0 /

PLAIN
K 8
branches
V 16
dir 1-45.0.r45/0
K 9
graveyard
V 16
dir 1-50.0.r50/0
K 11
new_modules
V 23
dir 1-1684.0.r1819/1885
K 7
release
V 16
dir 1-49.0.r49/0
K 5
trunk
V 21
dir 1-47.0.r1898/9953
END
ENDREP
id: 0-44.0.r1898/10380
type: dir
pred: 0-44.0.r1897/11338
count: 160
text: 1898 10175 192 0 02bac40d618bdfb4e4d20c8d0c40a81a
cpath: /sassie_2.0
copyroot: 0 /

PLAIN
K 6
README
V 20
file 0-52.0.r1653/43
K 18
core_libraries_1.0
V 23
dir 0-1894.0.r1896/3347
K 6
papers
V 31
dir 1-1525.0-1526.r1883/1527820
K 10
sasmol_1.0
V 23
dir 0-1651.0.r1731/2946
K 11
sassie_0.98
V 18
dir 0-39.0.r42/385
K 10
sassie_1.0
V 22
dir 0-29.0.r1882/17767
K 10
sassie_2.0
V 22
dir 0-44.0.r1898/10380
END
ENDREP
id: 0.0.r1898/10868
type: dir
pred: 0.0.r1897/11826
count: 1898
text: 1898 10539 316 0 7018b232a619dba268a58e60e8cad254
cpath: /
copyroot: 0 /

9-1897.0.t1897-1gp modify-file true false /sassie_2.0/trunk/sassie/core_libraries/cpp/overlap/Makefile

o-1897.0.t1897-1gp modify-file true false /sassie_2.0/trunk/sassie/core_libraries/cuda/overlap/Makefile

17-1893.0.t1897-1gp modify-file true false /sassie_2.0/trunk/sassie/simulate/monte_carlo/extensions/overlap/overlap_extension.cpp

19-1893.0.t1897-1gp modify-file true false /sassie_2.0/trunk/sassie/simulate/monte_carlo/extensions/overlap/setup_overlap.py

8-1661.0-1779.t1897-1gp modify-file true false /sassie_2.0/trunk/sassie/util/sasconfig.py

13m-1649.0.t1897-1gp modify-file true false /sassie_2.0/trunk/setup.py


10868 11012
